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You can use GFI's Languard to scan your server for common vulnerabilities and run Chkrootkit to scan your files to check CRC's. Anything is possible these days.. like someone else said.. the only safe server is one that's unplugged. I've had my server rooted only once.. but that was enough.. have had game servers installed, httpds compromised and a phishing site setup... sendmail hacked.. etc.. if these fucking people want to get in your machine and they are good they will.
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