you'll need to be more specific about what OS it is and such..
personally i'd tar it up and use the scp command.
it works like this
scp <filename> <ip>:<location>
for example if your tar file was called foo.tar and the server ip your trying to copy to was 1.2.3.4 and you wanted it in the /home dir it would look something like
scp foo.tar 1.2.3.4:/home
it would ask for the login and pass, type that in and u should be good.. hope it helps ;)
or you could just enable fxp and do it through ftp
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