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Go to Manage Bookmarks in the Bookmarks menu, then when you're in the Bookmarks Manager, Go to File and choose Export. Save your bookmarks wherever you want. Then when you reformat, go back to the Bookmarks Manager and Import them.
Or just back up the bookmarks.html file from:
C:\Documents and Settings\User\Application Data\Mozilla\Firefox\Profiles
And copy it back there after reformatting.
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