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Well, they'll both be using the same log files. Are you planning to generate stats for the same site(s) using both awstats and webalizer? If not, I don't see a problem. I haven't used webalizer in quite some time but the installation of awstats alone won't break webalizer. If you were to have awstats delete log files after it had finished with them and before webalizer could go through them, there would obviously be a little problem.
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