Your best bet would be to hire someone to look at your machine for you, I think one of the fellows in this threads offered Linux Administration, and bought up some good points,
The fact is it really could be any one of hundreds of possible problems, from a bad NIC, non-duplexed NIC, bad memory, IDE channel drivers, and that's just hardware, not even looking at potential problems with the software itself.
Your best bet would be to spend a little cash on a professional to do a diagnosis on your machine, they most likely will find the problem, and perhaps even be able to tune it better.
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