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I have used Cleaner XL for many years for encoding and watermarking WMV, MPEG, Real and other formats. I only used Sorenson Squeeze for a couple of formats including Ipod compatible MP4s. But Videocharge has been working great for me for many formats lately and it has the ability to encode to many formats including Flash with the ON2 VP6 codec and it is also able to watermark all formats as well.
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