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You can't do anything apache can't.
You can't delete files if they are not owned by apache and dir permissions are not set properly. If you want to delete files/folders, apache has to be the owner corresponding file and directory. This all doesn't have anything to do with php per se, but how your server is setup. You'll have to read up on unix permissions to see what you can and can't do. You can't delete the folder again, if the upper folder doesn't give you permissions to do so, or you're not the owner of the folder. Then there's various other security settings that might be preventing you to do things that normally you could. Ask your host for help since you don't know it.
To actually delete and do whatever the fuck you want, you'd need to suid yourself in php environment. This is ofcourse a big big no no and if you actually chose this route, you can expect to have alot bigger problems on your hands. Rather work with host and figure out what/where you want to modify with apache perms and set permissions accordingly.
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