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That's what rackshack is for. Get a damn 99 buck box and solely use it as backup using rsync.
It is also a good idea to stay on the ball with security updates to your server so such things like they reported to you do not happen.
I back up twice.
1. I mirror 1 harddisk to another
2. I rsync to a cheap rackshack server.
If such a thing happens all I have to do is change the dns entries and I am back to business.
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