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You can just write a small shell script which uses cp to copy your wwwroot to another location (drive) and dump your MySQL tables w/ the mysqldump command.
Or, if you have a fast connection from one server to another you can write a small shell script which uses scp (secure copy) to copy your wwwroot to another server, dump your MySQL tables and scp them, then run the backed up sql code to insert the database on the new server
Eventually you can use cron to do it daily or so. Your host should be able to set it up, its just a couple of lines.
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